Cedric Gondro

Associate Professor

Phone: 02 6773 3978 (or +61 2 6773 3978 overseas)

Email: cgondro2@une.edu.au

Office: Homestead Building W47, room 18

publications

    books

    1.       Gondro, C. (2015). Primer to Analysis of Genomic Data Using R. Use R!, Springer, Berlin.

    edited books

    1.       Gondro, C., J.H.J. van der Werf and B. Hayes (2013). Genome-Wide Association Studies and Genomic Prediction. Methods in Molecular Biology, Springer, Berlin.

    2.       van der Werf, J.H.J., R. Frankham, H. -U. Graser and C. Gondro (2008). Adaptation and Fitness in Animal Populations: Perspectives on Genetic Resource Management. Springer, Berlin.

    book chapters

    1.       Gondro, C., L.R. Porto-Neto and S.H. Lee (2013). R for Genome Wide Association Studies. Genome-Wide Association Studies and Genomic Prediction. C. Gondro, J.H.J. van der Werf and B. Hayes. Methods in Molecular Biology, Springer: 1-18. 

    2.       Gondro, C., S.H. Lee, H.K. Lee and L.R. Porto Neto (2013). Quality Control for Genome Wide Association Studies. Genome-Wide Association Studies and Genomic Prediction. C. Gondro, J.H.J. van der Werf and B. Hayes. Methods in Molecular Biology, Springer: 129:148.

    3.       Porto Neto, L.R., S.H. Lee, H.K. Lee and C. Gondro (2013). Signatures of Selection and Population Diversity Measures. Genome-Wide Association Studies and Genomic Prediction. C. Gondro, J.H.J. van der Werf and B. Hayes. Methods in Molecular Biology, Springer: 423-436. 

    4.       Gondro, C. and P. Kwan (2013). Parallel Evolutionary Computation in R. Bioinformatics: Concepts, Methodologies, Tools, and Applications. IGI Global: 105-129 (previous work republished by Publisher in a new volume).

    5.       Gondro, C. and P. Kwan (2012). Parallel evolutionary computation in R. Multidisciplinary Computational Intelligence Techniques: Applications in Business, Engineering and Medicine. S. Ali, N. Abbadeni and M. Batouche. IGI Global: 351-377.

    6.       Magalhaes, J.C.M. and C. Gondro (2011). A contemporary view of population genetics in evolution. Brazilian Studies in Philosophy and History of Science. D. Krause and A.A.P. Videira. Berlin, Springer: 281-290.

    7.       Kinghorn B.P., R. Banks, C. Gondro, V.D. Kremer, S.A. Meszaros, S. Newman, R.K. Shepherd, R.D. Vagg and J.H.J. van der Werf (2008). Strategies to exploit genetic variation while maintaining diversity. Adaptation and Fitness in Animal Populations: Perspectives on Genetic Resource Management. J.H.J. van der Werf, R. Frankham, H.-U. Graser and C. Gondro. Berlin, Springer: 191-200.

    8.       Gondro, C. and J.C.M. Magalhaes (2005). A simple genetic algorithm for studies of mendelian populations. Recent Advances in Artificial Life. H.A. Abbass, T. Bossamaier and J. Wiles. London, World Scientific Publishing: 85-98.

    journal articles

    1.       Gondro, C., L.R. Porto Neto and S.H. Lee (2014). snpQC – an R pipeline for quality control of Illumina SNP genotyping array data. Animal Genetics 45:758-761.

    2.       Ferdosi, M.H., B.P. Kinghorn, J.H.J. van der Werf, S.H. Lee and C. Gondro (2014). hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups. BMC Bioinformatics 15:172.

    3.       Barns, M., C. Gondro, R.L. Tellam, H.G. Radley-Crabb, M.D. Grounds, T. Shavlakadze (2014). Molecular analyses provide insight into mechanisms underlying sarcopenia and myofibre denervation in old skeletal muscles of mice. The International Journal of Biochemistry & Cell Biology 53:174-185.

    4.       Strucken, E.M., B. Gudex, M.H. Ferdosi, H.K. Lee, K.D. Song, J.P. Gibson, M. Kelly, E.K. Piper, L.R. Porto-Neto, S.H. Lee, C. Gondro (2014). Performance of different SNP-panels for parentage testing in two East-Asian cattle breeds. Animal Genetics 45:572–575.

    5.       Byrne, K., S. McWilliam, T. Vuocolo, C. Gondro, N.E. Cockett, R.L. Tellam (2014). Genomic architecture of histone 3 lysine 27 trimethylation during late ovine skeletal muscle development. Animal Genetics 45(3):427-438.

    6.       Ferdosi, M.H., B.P. Kinghorn, J.H.J. van der Werf and C. Gondro (2014). Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes. Genetics Selection Evolution 46:11.

    7.       Porto Neto, L.R., S.H. Lee, T.S. Sonstegard, C.P. VanTassell, H.K. Lee, J.P. Gibson and C. Gondro (2014). Genome-wide detection of signatures of selection in Korean Hanwoo cattle. Animal Genetics 45(2):180-190.

    8.       Lee, S.H., S.C. Kim, H.H. Chai, S.H. Cho, H.C. Kim, D. Lim, B.H. Choi, C.G. Dang, A. Sharma, C. Gondro, B.S. Yang, S.K. Hong (2014). Mutations in calpastatin and µ-calpain are associated with meat tenderness, flavor and juiciness in Hanwoo (Korean cattle): Molecular modeling of the effects of substitutions in the calpastatin/µ-calpain complex. Meat Science 96(4):1501-1508.

    9.       Al-Husseini, W., C. Gondro, K. Quinn, R.M. Herd, J.P. Gibson, Y. Chen (2014). Expression of candidate genes for residual feed intake in Angus cattle. Animal Genetics 45(1):12-19.

    10.   Porto-Neto, L.R., T.S. Sonstegard, G.E. Liu, D.M. Bickhart, M.V.B. da Silva, M.A. Machado, Y.T. Utsunomiya, J.F. Garcia, C. Gondro and C.P. VanTassell (2013). Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics, 14:876.

    11.   Heekin, A.M., F.D. Guerrero, K.G. Bendele, L. Saldivar, G.A. Scoles, S.E. Dowd, C. Gondro, V. Nene, A. Djikeng, K.A. Brayton (2013). The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis. Parasites and Vectors, 6:276.

    12.   S.H. Lee, B.H. Choi, D. Lim, C. Gondro, Y.M. Cho, C.G. Danga, A. Sharma, G.W. Jang, K.T. Lee, D. Yoon, H.K. Lee, S.H. Yeon, B.S. Yang, H.S. Kang and S.K. Hong (2013). Genome wide association study identifies major loci for carcass weight on BTA14 in Hanwoo (Korean cattle). PLOS ONE, 8(10):e74677.

    13.   Heekin, A.M., F.D. Guerrero, K.G. Bendele, L. Saldivar, G.A. Scoles, S.E. Dowd, C. Gondro, V. Nene, A. Djikeng, K.A. Brayton (2013). Gut transcriptome of replete adult female cattle ticks, Rhipicephalus (Boophilus) microplus, feeding upon a Babesia bovis-infected bovine host.  Parasitology Research, 112:3075-3090.

    14.   Shavlakadze, T., T. Anwari, Z. Soffe, G. Cozens, P. Mark, C. Gondro, M.D. Grounds (2013). Impact of fasting on the rhythmic expression of myogenic and metabolic factors in skeletal muscle of adult mice. American Journal of Physiology - Cell Physiology, 305(1):C26-C35.

    15.   Al-Husseini, W., C. Gondro, K. Quinn, L.M. Cafe, R.M. Herd, J.P. Gibson, P.L. Greenwood and Y. Chen (2013). Effects of hormonal growth implants on feed efficiency and expression of RFI-associated genes in beef cattle. Animal Production Science 54(5) 550-556.

    16.   Rispoli, L.A., R.R. Payton, C. Gondro, A.M. Saxton, K.A. Nagle, B.W. Jenkins, F.N. Schrick and J.L. Edwards (2013). Heat stress effects on the cumulus cells surrounding the bovine oocyte during maturation: altered matrix metallopeptidase 9 and progesterone production. Reproduction, 146(2):193-207.

    17.   Lim, D., C Gondro, H.S. Park, Y.M. Cho, H.H. Chai, H.H. Seong, B.S. Yang, S.K. Hong, W. K. Chang and S.H. Lee (2013). Identification of recently selected mutations driven by artificial selection in Hanwoo (Korean cattle). Asian-Australasian Journal of Animal Sciences 26(5):603-608.

    18.   Katz, M., K. Braunberger, G. Yi, S. Cooper, H.M. Nonhebel and C. Gondro (2013). A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus Aspergillus nidulans. F1000 Research. doi: 10.3410/f1000research.2-72.v1

    19.   Ebejer, J.L., S.E. Medland, J. van der Werf, C. Gondro, A.K. Henders, M. Lynskey, N.G. Martin, D.L. Duffy (2012). Attention deficit hyperactivity disorder in Australian adults: prevalence, persistence, conduct problems and disadvantage. PLOS ONE 7(10):e47404.

    20.   Heekin, A.M., F.D. Guerrero, K.G. Bendele, L. Saldivar, G.A. Scoles, C. Gondro, V. Nene, A. Djikeng and K.A. Brayton (2012). Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus. Parasites & Vectors 5:162.

    21.   Detterer D., P. Kwan and C. Gondro (2012). A Co-evolving memetic wrapper for prediction of patient outcomes in TCM informatics. Frontiers of Computer Science 6(5):621-629.

    22.   Lee, S.H., J.H.J. van der Werf, S.H. Lee, D.J. Lim, E.W. Park, C. Gondro, D. Yoon, S.J. Oh, O.H. Kim, J. Gibson and J. Thompson (2012). Genome wide QTL mapping to identify candidate genes for carcass traits in Hanwoo (Korean cattle). Genes and Genomics 34(1):43-49.

    23.   Kogelman, L.J.A., K. Byrne, T. Vuocolo, N.S. Watson-Haigh, H.N. Kadarmideen, J.W. Kijas, H. Oddy, G.E. Gardner, C. Gondro and R.L. Tellam (2011). Genetic architecture of gene expression in ovine skeletal muscle. BMC Genomics 12:607.

    24.   Lee, S.H., J.H.J. van der Werf, N.K. Kim, S.H. Lee, C. Gondro, E.W. Park, S.J. Oh, J.P. Gibson and J.M. Thompson (2011). QTL and gene expression analyses identify genes affecting carcass weight and marbling on BTA14 in Hanwoo (Korean Cattle). Mammalian Genome 22(9):589-601.

    25.   Chen, Y., C. Gondro, K. Quinn, R.M. Herd, P.F. Parnell and B. Vanselow (2011). Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake. Animal Genetics 42(5):475-490.

    26.   Lew-Tabor, A.E., S. Kurscheid, R. Barrero, C. Gondro, P.M. Moolhuijzen, M. Rodriguez-Valle, J.A.T. Morgan, C. Covacin and M.I. Bellgard (2011). Gene expression evidence for off target effects caused by RNA interference-mediated gene silencing of Ubiquitin-63E in the cattle tick Rhipicephalus microplus. International Journal for Parasitology 41(9):1001-1014.

    27.   Lee, S. H., C. Gondro, J.H.J van der Werf, N.K. Kim, D.J. Lim, E.W. Park, S.J. Oh, J.P. Gibson and J. M. Thompson (2010). Use of a bovine genome array to identify new biological pathways for beef marbling in Hanwoo (Korean cattle). BMC Genomics 11:623.

    28.   Rodriguez, V.M., A. Lew-Tabor, C. Gondro, P. Moolhuijzen, M. Vance, F.D. Guerrero, M. Bellgard and W. Jorgensen (2010). Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and Bos taurus cattle. BMC Genomics 11:437.

    29.   Goodswen, S.J., C. Gondro, N.S. Watson-Haigh and H.N. Kadarmideen (2010). FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases. BMC Bioinformatics 11:311.

    30.   Byrne, K, T. Vuocolo, C. Gondro, J.D. White, N.E. Cockett, T. Hadfield, C.A. Bidwell, J.N Waddell and R.L. Tellam (2010). A gene network switch enhances the oxidative capacity of ovine skeletal muscle during late fetal development. BMC Genomics 11:378.

    31.   Piper, E.K., L.A. Jackson, H. Bielefeldt-Ohmann, C. Gondro, A.E. Lew and N.N. Jonsson (2010). Tick-susceptible Bos taurus cattle display an increased cellular response at the site of larval Rhipicephalus (Boophilus) microplus attachment, compared with tick-resistant Bos indicus cattle. International Journal for Parasitology 40(4):431-441.

    32.   Piper, E.K., N.N. Jonsson, C. Gondro, A.E. Lew, P. Moolhuijzen, M.E. Vance, L.A. Jackson (2009). Immunological profiles of Bos taurus and Bos indicus cattle infested with the cattle tick, Rhipicephalus (Boophilus) microplus. Clinical and Vaccine Immunology 16(7):1074-1086.

    33.   Alle, B.R., L. Furtado-Alle, C. Gondro and J.C.M. Magalhaes (2009). Kuri: a simulator of ecological genetics for tree populations. Journal of Artificial Evolution and Applications. doi:10.1155/2009/783647.

    34.   Marshall, K., J. Maddox, S. Lee, Y. Zhang, L. Kahn, H.-U. Graser, C. Gondro, S. Walkden-Brown and J. van der Werf (2009). Genetic mapping of quantitative trait loci for resistance to Haemonchus contortus in sheep. Animal Genetics 40(3): 262-272.

    35.   Rowe, A., C. Gondro, D. Emery and N. Sangster (2009). Sequential microarray to identify timing of molecular responses to Haemonchus contortus infection in sheep. Veterinary Parasitology 161(1-2): 76-87.

    36.   Gondro, C. and B. P. Kinghorn (2008). Optimization of cDNA microarray experimental designs using an Evolutionary Algorithm. IEEE Transactions on Computational Biology and Bioinformatics 5(4): 630-638.

    37.   Saldivar, L., F. D. Guerrero, R. J. Miller, K.  G. Bendele, C. Gondro and K. A. Brayton (2008). Microarray analysis of acaricide-inducible gene expression in the southern cattle tick, Rhipicephalus (Boophilus) microplus. Insect Molecular Biology 17 (6): 597-606.

    38.   Rowe, A., C. Gondro, D. Emery and N. Sangster (2008). Genomic analyses of Haemonchus contortus infection in sheep: abomasal fistulation and two Haemonchus strains do not substantially confound host gene expression in microarrays. Veterinary Parasitology 154 (1-2): 71-81.

    39.   Gondro, C. and B. P. Kinghorn (2007). A simple genetic algorithm for multiple sequence alignment. Genetics and Molecular Research 6(4): 964-982.

    full conference articles

    1.       C. Gondro, E. M. Strucken, H. K. Lee, K. D. Song and S. W. Lee (2014). Selection of SNP Panels for Parentage Testing. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    2.       B. Gudex, D. Johnson, C. Gondro and K. Singh (2014). Prenatal Maternal Genetic, Permanent Environmental and Paternal Epigenetic Effects In New Zealand Dairy Cattle. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    3.       E. M. Strucken, E. K. Piper, H. K. Lee, K. D. Song, J. Gibson, S. W. Lee and C. Gondro (2014). Fat Cows - Selection Signatures in Korean Hanwoo and Australian Wagyu Cattle. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    4.       J. M. Ojango, A. G. Marete, F. D. N. Mujibi, J. Rao, J. Poole, E. O. Rege, S. Weerasinghe, C. Gondro, J. Gibson and O. Mwai (2014). A Novel use of High Density SNP Assays to Optimize Choice of Different Crossbred Dairy Cattle Genotypes in Small-Holder Systems in East Africa. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    5.       M. H. Ferdosi, J. van der Werf, B. Tier and C. Gondro (2014). Evaluation of the BEAGLE Haplotype Reconstruction Algorithm. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    6.       F. D. N. Mujibi, J. M. Ojango, J. Rao, A. Kihara, A. G. Marete, I. Baltenweck, J. Poole, E. O. Rege, C. Gondro, S. Weerasinghe, J. Gibson, A. M. Okeyo and T. Karanja (2014). Use of High Density SNP Genotypes to Determine the Breed Composition of Cross Bred Dairy Cattle in Smallholder Farms: Assessment of Reproductive and Health Performance. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    7.       H. A. Al-Mamun, S. Clark, P. Kwan and C. Gondro (2014). Genome-Wide Association Study on Body Weight Reveals Major Loci on OAR6 in Australian Merino Sheep. Proceedings of the 10th World Congress on Genetics Applied to Livestock Production.

    8.       Detterer, D.C, S.H. Lee, P. Kwan and C. Gondro (2013). K-means clustering on SNP data for prediction of phenotypic outcomes in Hanwoo (Korean) cattle. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:511-514. 

    9.       Ferdosi, M.H. B.P. Kinghorn, J.H.J. van der Werf and C. Gondro (2013). Effect of genotype and pedigree error on detection of recombination events, sire imputation and haplotype inference using the hsphase algorithm. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:546-549

    10.   Weerasinghe, W.M.S.P., C. Gondro, M.G. Jeyaruban, O. Mwai, D.F. Mujibi and J.P. Gibson (2013). The prediction of genetic structure of East African smallholder dairy cattle. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:163-166.

    11.   Al-Husseini, W., C. Gondro, R.M. Herd, J.P. Gibson, P.F. Arthur and Y. Chen (2013). Microrna profiling in cattle divergently selected for residual feed intake. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:368-371.

    12.   Al-Kalaldeh, M., J.P. Gibson, J.H.J. van der Werf and C. Gondro (2013). Estimation and partitioning of genetic variation captured by SNP markers for parasite resistance in sheep. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:412-415.

    13.   Al-Mamun, H.A., P. Kwan, R.L. Tellam, J.W. Kijas and C. Gondro (2013). A study on effects of family and haplotype blocks on conservation of gene expression traits in half-sib sheep families. Proceedings of the 20th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 20:266-269.

    14.   Gondro, C., G.W. Jang, S.H. Lee, S.H. Yeon and H.H. Seong (2012). Genetic Architecture and Population Structure of Hanwoo Cattle. Proceedings of the 15th AAAP Animal Science Congress. 15:848-851.

    15.   Neto, L.R.P, S.H. Lee and C. Gondro (2012). Genome-Wide Scan for Evidence of Positive Selection in Hanwoo Cattle. Proceedings of the 15th AAAP Animal Science Congress. 15:300-303.

    16.   Lee, S.H, B.H. Choi, D. Lim, Y.M. Cho, C. Gondro, C.G. Dang, H.C. Kim, K.J. Jeon, S.H. Yeon and B.S. Yang (2012). Beyond Genome Wide Association Tests in the Livestock Industry: Genetic Architecture of Growth and Carcass Weight in Hanwoo. Proceedings of the 15th AAAP Animal Science Congress. 15:870-873.

    17.   Weerasighe, W.M.S.P., C. Gondro, J.M. Henshall, M.G. Jeyaruban and J.P. Gibson (2012). Use of SNP Marker Data to Analyse Population Structure in Crossbred Sheep. Proceedings of the 15th AAAP Animal Science Congress. 15:1755-1758.

    18.   Piper, E.K., N.N. Jonsson, C. Constantinoiu, C. Gondro, A.E. Lew-Tabor, M.E. Vance, and L.A. Jackson (2011). Gene expression profiling as a tool for understanding the host response to cattle ticks. Proceedings of Advances in the knowledge of parasite resistance of ruminant hosts and parasites.

    19.   Massault, C., J. Henshall, C. Gondro and J.H.J. van der Werf (2011). Towards a comprehensive recombination map of hotspots and coldspots in sheep. Proceedings of the 19th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 19:375-378.

    20.   Kogelman, L.J.A., N.S. Watson-Haigh, H.N. Kadarmideen, J.W. Kijas, T. Vuocolo, K. Byrne, H. Oddy, G.E. Gardner, C. Gondro and R.L. Tellam (2011). Functional genomics of estimated breeding value for eye muscle depth in sheep. Proceedings of the 19th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 19:462-465.

    21.   Al-Husseini, W, K. Quinn, R.M. Herd, C. Gondro, J.P. Gibson, L.M. Café, P.L. Greenwood and Y. Chen (2011). Expression of candidate genes for residual feed intake in beef cattle. Proceedings of the 19th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 19:207-210.

    22.   Gondro, C., E.K. Piper and Y. Chen (2010). Bovine gene expression platforms for global transcription profiling studies. Proceedings of the 9th World Congress on Genetics Applied to Livestock Production.

    23.   Porto Neto, L.R., E.K. Piper, N.N. Jonsson, W. Barendse and C. Gondro (2010). Meta-analysis of genome wide association and gene expression studies to identify candidate genes for tick burden in cattle. Proceedings of the 9th World Congress on Genetics Applied to Livestock Production.

    24.   Kadarmideen, H.N., N. Watson-Haigh, J.W. Kijas, T. Vuocolo, K. Byrne, C. Gondro, H. Oddy, G.E. Gardner and R.L. Tellam (2010). Genetics of global gene expression patterns and gene networks affecting muscling in sheep. Proceedings of the 9th World Congress on Genetics Applied to Livestock Production.

    25.   Goodswen, S.J., C.Gondro, H.N. Kadarmideen and J.H.J. van der Werf (2010). Evaluating haplotype diversity within and between Australian sheep breeds. Proceedings of the 9th World Congress on Genetics Applied to Livestock Production.

    26.   Gudex, B., B. Walmsley, C. Gondro and J.H.J. van der Werf (2010). The influence of sexual dimorphism on the feed efficiency of lamb production. Proceedings of the 9th World Congress on Genetics Applied to Livestock Production.

    27.   Valle de Souza, S., C. Gondro and O. Cacho (2010). An optimization model for the banana northern prawn fishery. Proceedings of the 54th Conference of the Australian Agricultural and Resource Economics Society. http://purl.umn.edu/59173

    28.   Gondro, C. (2009). Summarization methods and quality problems in Affymetrix microarrays. Proceedings of the 18th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 18: 304-307.

    29.   Goodswen, S.J., H.N. Kadarmideen, C. Gondro and J.H.J. van der Werf (2009). A framework to link whole genome SNP association studies to systems genetics. Proceedings of the 18th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 18: 454-457.

    30.   Lee, S.H, C. Gondro, N.K. Kim, D.J. Lim, Y.H. Shin, J.M. Thompson, J.P. Gibson and J.H.J van der Werf (2009). Identification of differentially expressed transcripts in M. longissimus dorsi with divergent marbling phenotypes in Hanwoo (Korean Native Cattle). Proceedings of the 18th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 18: 179-182.

    31.   Chen, Y., C. Gondro, K. Quinn, B. Vanselow, P.F. Parnell and R.M. Herd (2009). Global gene expression profiling of angus cattle selected for low and high net feed intake. Proceedings of the 18th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 18: 171-174.

    32.   Gudex, B.W., K. Marshall, C. Gondro and J.H.J. van der Werf (2009). The genetics of sexual dimorphism in sheep. Proceedings of the 18th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 18: 14-17.

    33.   Gondro, C. and B. P. Kinghorn (2007). Solving complex problems with evolutionary computation. Proceedings of the 17th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics (invited). 17: 272-279.

    34.   Walmsley, B. J., C. Gondro, J. H. J. van der Werf and B. P. Kinghorn (2007). Optimising the allocation of beef cattle to market endpoints. Proceedings of the 17th Conference of the Australian Association for the Advancement of Animal Breeding and Genetics. 17: 292-295.

    35.   Eissing, T., S. Waldherr, C. Gondro, E. Bullinger,  O. Sawodny, F. Allgower, P. Scheurich and T. Sauter (2006). Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during tumor necrosis factor stimulation. Proceedings of the IEEE International Conference on Control Applications 2006. 1746-1752. 

    36.   Gondro, C. and B. P. Kinghorn (2006). An evolutionary algorithm for optimization of cDNA microarray experimental designs. Proceedings of the 8th World Congress on Genetics Applied to Livestock Production.

    37.   de Souza, S. V. and C. Gondro (2006). Optimization of tax rates to balance effort and biomass in a single species bioeconomic fishery model. Proceedings of the 15th New South Wales Coastal Conference.

other publications

1.       Gondro, C (2014). Genetic Architecture of East Asian Cattle Breeds: Opportunities and Challenges. Proceedings of PAG Asia 2014 (invited).

2.       de Souza, S.V. C. Gondro, R. Hean and O. Cacho (2014). A Stage-structured population matrix for Banana Prawns  (Penaeus merguiensis) in the Gulf of Carpentaria, Australia. Proceedings of IIFET 2014.

3.       de Souza, S.V. and C. Gondro (2013). The effects of environmental variables on catch of Banana Prawns in the Australian Gulf of Carpentaria. Proceedings of ICES/ASC 2013.

4.       Gondro, C., G. Jang and S. Lee (2012). Selection, Diversity and Bottlenecks in Hanwoo Cattle. Proceedings of the International Society of Animal Genetics 2012.

5.       Al kalaldeh, M. and C. Gondro (2012). Meta-analysis of gene expression studies to identify genes involved with Haemonchus contortus resistance in sheep. Proceedings of the International Society of Animal Genetics 2012.

6.       Weerasinghe, W.M.S.P., C. Gondro, M.G. Jeyaruban, J.M. Henshall, J. Kijas and J.P. Gibson (2012). Genetic Structure and Diversity of Australian Sheep Breeds. Proceedings of the International Society of Animal Genetics 2012.

7.       AL-Husseini, W., C. Gondro, K. Quinn, L.M. Cafe, R.M. Herd, J.P. Gibson, P.L. Greenwood, Y. Chen (2012). Effects of hormonal growth implant on feed efficiency and expression of RFI-associated genes in beef cattle. Proceedings of the International Society of Animal Genetics 2012.

8.       Chen, Y., C. Gondro, W. Al-Husseini, R. Herd, J.P. Gibson and P. Arthur (2012). Profiling Bovine Liver microRNA by Deep Sequencing. Proceedings of the International Society of Animal Genetics 2012.

9.       Gondro, C., G. Jang, S. Lee, S. Yeon and H. Seong (2012). Genetic diversity and relationships of Hanwoo cattle with other bovine breeds. Proceedings of the 2012 Korea Genome Organization – KOGO (invited).

10.   Gondro, C. (2012). Applications, opportunities and challenges of high-throughput genomic technologies applied to animal genetics. Symposium on Hanwoo Genetic Improvement and Genomic Selection (invited).

11.   Tellam, R.L., K. Byrne, S. McWilliam, T. Vuocolo, N. Cockett, C. Gondro (2011). Genome-wide CHiP-SEQ analysis of histone 3 lysine 27 trimethylation during ovine skeletal muscle development highlights chromosome organization and regulation of gene expression. Proceedings of the NGS Asia Congress.

12.   Lew-Tabor, A.E., M. Rodriguez Valle, M., S. Kurscheid, R. Barrero, C. Gondro, P.M. Moolhuijzen, J.A.T. Morgan, A.B. Bruyeres, B. Zhang and M.I. Bellgard (2011). Microarray evidence for off target effects in tick RNA interference experiments, and the lack of strong correlation between dsRNA and antibody phenotypes in tick in vitro treatments for vaccine candidate screening. Proceedings of the 7th Tick and Tick Borne Pathogens Conference.

13.   Guerrero, F.D., S.K. Wikel, A.E. Lew-Tabor, R. Andreotti, M.I. Bellgard, K. Brayton, M. Rodriguez Valle, L. Saldivar, S.E. Dowd, D. Brake, C. Gondro, P.D. Teel, and A.A. Pérez de León (2011). One health approach to systems biology research on ticks and tick-borne diseases. Proceedings of the Gordon Research Conferences 2011 (Tropical Infectious Diseases).

14.   Bellgard, M.I., F.D. Guerrero, P.M. Moolhuijzen, D. Schibeci, A. Hunter, M. Rodriguez-Valle, R. Barrero, C. Gondro, A.E. Lew-Tabor (2010). Toward a genome sequence for Rhipicephalus (Boophilus) microplus: CattleTickBase available resources for the research community. Proceedings of the XIIth International Congress of Parasitology.

15.   Lew-Tabor, A.L., M. Rodriguez-Valle, P.M. Moolhuijzen, A.G. Bruyeres, C. Gondro (2010). Screening of anti-peptide antibodies in vitro to identify potential cattle tick vaccine antigens. Proceedings of the XIIth International Congress of Parasitology.

16.   Keren B., S. McWilliam, T. Vuocolo, N. Cockett, C. Gondro, R. L. Tellam (2010). Genome-wide CHiP-SEQ analysis of histone 3 Lysine 27 trimethylation during ovine skeletal muscle development. Proceedings of the International Society of Animal Genetics 2010.

17.   Goodswen, S. J., N. S. Nathan-Haigh, H. N. Kadarmideen and C. Gondro (2009). Development of systems biology tools to identify causal SNPs for complex traits. Proceedings of the 10th International Conference on Systems Biology.

18.   Piper, E. K., L. A. Jackson, H. Bielefeldt-Ohmann, C. Constantinoiu, C. Gondro, S. J. Jarrett, W. K. Jorgensen, A. E. Lew-Tabor, P. Moolhuijzen, M. E. Vance, O. Weiss and N. N. Jonsson (2009). Resistance to cattle tick (Rhipicephalus microplus) infestation: immunological or physiological?. Proceedings of the 2009 ASP & ARC/NHMRC Research Network for Parasitology Annual Conference.

19.   Gondro, C. and J. H. J. van der Werf (2008). On the importance of QC measures in microarray analyses. Proceedings of the Canadian Society of Animal Science 2008.

20.   de Souza, S. V., C. Gondro and O. Cacho (2008). A bioeconomic model using a stage population matrix for the Northern Prawn Fishery in Australia. Proceedings of the Fourteenth Biennial Conference of the International Institute of Fisheries Economics & Trade.

21.   Jones, M.E., E.K. Piper, C.M. Minchin, B. Zhang, P.M. Moolhuijzen, C. Gondro, N. N. Jonsson, M. I. Bellgard, A E. Lew and L. A. Jackson (2008). Up-regulated expression of Interleukin-2 receptor alpha in tick resistant cattle. Proceedings of ComBio 2008.

22.   Piper, E. L. Jackson, C. Constantinoiu, C. Gondro, A. Lew, P. Moolhuijzen, W. Jorgensen, M. Bellgard and N Jonsson (2008). Gene expression in the skin of tick-resistant and tick-susceptible cattle prior to and following infestation with Rhipicephalus microplus. Proceedings of the VI International Conference on Ticks and Tick-borne Pathogens.

23.   Rodriguez, M. V., A. Lew, C. Gondro, S. Kurscheid, S. Jarrett, C. Minchin, P. Moolhuijzen, M. Bellgard and F. Guerrero (2008). Transcriptome analysis of Rhipicephalus (Boophilus) microplus. Proceedings of the VI International Conference on Ticks and Tick-borne Pathogens.

24.   Lew, A., L. Jackson, M. V. Rodriguez, E. Piper, S. Kurscheid, P. Moolhuijzen, C. Constantinoiu, M. Jones, W. Jorgensen, C. Gondro, A. Bruyeres, S. Jarrett, C. Minchin, B. Venus, B. Zhang, M. Bellgard, F. Guerrero and N. Jonsson (2008). Reverse vaccinology approach for the identification of novel Rhipicephalus (Boophilus) microplus vaccine candidates. Proceedings of the VI International Conference on Ticks and Tick-borne Pathogens.

25.   Chen, Y., C. Gondro, K. Quinn and R. Herd (2008). Global gene expression for cattle selection lines with low and high feed efficiency. Proceedings of the International Society of Animal Genetics 2008.

26.   Jackson, L. A., E.K. Piper, P.M. Moolhuijzen, C. Gondro, M.E. Jones, S.J Jarrett, A.E. Lew, and N.N. Jonsson (2008). Bos taurus and Bos indicus cattle undergoing infestation with Rhipicephalus microplus have different patterns of gene expression and immune reactions. Proceedings of the 3rd International Symposium on Animal Functional Genomics.

27.   Jackson, L. A., E.K. Piper, M.E. Jones, A.E. Lew, C. Gondro, P.M. Moolhuijzen and N.N. Jonsson (2008). Gene expression and immune studies in Bos taurus and Bos indicus cattle infested with Rhipicephalus microplus. Proceedings of the 3rd International Symposium on Animal Functional Genomics.

28.   Rowe, T., C. Gondro, D. Emery and N. Sangster (2007). Imune inhibition of establishment and development of Haemonchus contortus in sheep. Proceedings of the Australasian Society for Immunology 2007.

29.   de Souza, S. V. and C. Gondro (2007). A Tactical Management Tool for the Northern Prawn Fishery in Australia. Proceedings of the 1st Symposium on Integrated Coastal Zone Management.

30.   de Souza, S. V. and C. Gondro (2007). Application of differential evolution to optimize welfare in the Northern Prawn Fishery in Australia. Proceedings of the 5th International Fisheries Observer Conference.

31.   Gondro, C. and B. P. Kinghorn (2006). A simple genetic algorithm for multiple sequence alignment. Proceedings of the 14th International Conference on Intelligent Systems for Molecular Biology. 

32.   Alle, B. R., L. Furtado-Alle, C. Gondro and J. C. M. Magalhaes (2006). KGOP: software for simulation of genetic operators. Proceedings of the 52nd Conference of the Brazilian Society of Genetics. SBG. 982.